Implementation

The smaht-submitr tool is free and open source software. It is implemented as a Python package and is distributed on PyPi here: smaht-submitr. The source code for it can be found on GitHub here: smaht-dac/submitr. Below is an outline of the internal software documentation from the code.

submitr.submission module

submitr subpackages

• submitr.scripts package
  • submitr.scripts.make_sample_fastq_file module
  • submitr.scripts.resume_uploads module
  • submitr.scripts.submit_metadata_bundle module

submitr.exceptions module

exception submitr.exceptions.PortalPermissionError(server)

Bases: PermissionError