Object Model

Below are the object types (and data) supported by SMaHT Portal which may be relevant for metadata submission; types marked with (A) indicate abstract types which may not be directly created. Click on the name for more details. These can also be viewed within SMaHT Portal itself in a somewhat more rudimentary form here

Types

AlignedReads Analyte AnalytePreparation Assay BrainPathologyReport CellCulture CellCultureMixture CellCultureSample CellLine CellSample Consortium DeathCircumstances Demographic Diagnosis Document Donor DonorSpecificAssembly Exposure ExternalQualityMetric

FamilyHistory File (A) FileFormat FileSet FilterSet HistologyImage Image Library LibraryPreparation MedicalHistory MedicalTreatment NonBrainPathologyReport Ontology OntologyTerm OutputFile PathologyReport (A) Preparation (A) PreparationKit Protocol

QualityMetric ReferenceFile ReferenceGenome Sample (A) SampleSource (A) Sequencer Sequencing Software SubmissionCenter SubmittedFile (A) SupplementaryFile Tissue TissueCollection TissueSample Treatment UnalignedReads User VariantCalls

Tip

To view the above types as a type hierarchy here

Data

• Consortia   (or here)
• File Formats   (or here)
• File Formats (Aligned Reads)   (or here)
• File Formats (Unaligned Reads)   (or here)
• File Formats (Variant Calls)   (or here)
• Reference Genomes   (or here)
• Submission Centers   (or here)

See Also

• Type Hierarchy
• File and Sample Nomenclature
• Referencing Existing Data
• Benchmarking Data

[ Generated: 2025-03-14 1:51 PM EDT | data.smaht.org 0.143.1 ]