CellLine
Summary of SMaHT Portal object type CellLine . Types referencing this type are: CellCulture, CellCultureMixture, DonorSpecificAssembly. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.Description: A Cell Line is a high-level item that represents a specific immortalized cell line, such as COLO829BL.
Tip
See actual CellLine data hereRequired Properties
| Property | Type | Description |
|---|---|---|
| source | string | See below for more details. |
| submission_centers | SubmissionCenter array of string | See below for more details. See values here |
| submitted_id | string | See below for more details. |
| title | string | See below for more details. |
Identifying Properties
| Property | Type | Description |
|---|---|---|
| accession | string | See below for more details. |
| submitted_id | string | See below for more details. |
| uuid | string | See below for more details. |
Reference Properties
| Property | Type | Description |
|---|---|---|
| consortia | Consortium array of string | See below for more details. See values here |
| donor | Donor string | See below for more details. |
| parent_cell_lines | CellLine array of string | See below for more details. |
| source_donor | Donor string | See below for more details. |
| submission_centers | SubmissionCenter array of string | See below for more details. See values here |
| tissue_samples | Sample array of string | See below for more details. |
Properties
| Property | Type | Description |
|---|---|---|
| accession | string | A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.] |
| alternate_accessions | array of string • restricted | Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.] |
| code | string • unique | Code used in file naming scheme. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}$ |
| consortia | Consortium • array of string • unique | Consortia associated with this item. See values here |
| description | string | Plain text description of the item. |
| display_title | string • calculated | - |
| donor | Donor • string | Donor associated with the cell line. |
| parent_cell_lines | CellLine • array of string • unique | Cell lines the cell line was derived from. |
| source | string | Source of the cells (vendor or institution). |
| source_donor | Donor • calculated • string | - |
| status • deleted • draft • in review ← default • obsolete • public • released • restricted | enum of string • default: in review | - |
| submission_centers | SubmissionCenter • array of string • unique | Submission Centers that created this item. See values here |
| submitted_id | string | Unique identifier for the item assigned by the submitter. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_CELL-LINE_[A-Z0-9-_.]{4,}$ |
| tags | array of string • min string length: 1 • max string length: 50 • unique • restricted | Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$ |
| tissue_samples | Sample • array of string • unique | Tissue samples the cell line was derived from. |
| title | string • min length: 3 | Name of the cell line. |
| url | string • format: uri | URL for vendor information on the cell line. |
| uuid | string | Unique ID by which this object is identified. |