CellSample

Summary of SMaHT Portal object type CellSample . Its parent type is: Sample. Types referencing this type are: FileSet. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Description: Samples consisting of isolated cells. The Cell Sample item is intended for specific cell types taken from a source tissue or cell culture, such as flow-sorted neurons from a brain. Because of this, the Cell Sample item will contain information on the cell type isolated and other relevant information.

Tip

See actual CellSample data here

Required Properties

Property	Type	Description
cell_ontology_id	string	See below for more details.
sample_sources	SampleSource array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
consortia	Consortium array of string	See below for more details. See values here
parent_samples	Sample array of string	See below for more details.
protocols	Protocol array of string	See below for more details.
sample_sources	SampleSource array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here

Properties

Property	Type	Description
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
cell_count	integer • min value: 1	The number of cells in the sample to be analyzed.
cell_ontology_id	string	Cell Ontology identifier for the cell sample. Must adhere to (regex) pattern: ^CL:[0-9]$
consortia	Consortium • array of string • unique	Consortia associated with this item. See values here
description	string	Plain text description of the item.
display_title	string • calculated	-
external_id	string	External ID for the item provided by submitter. Must adhere to (regex) pattern: ^[A-Za-z0-9-_]{3,}$
parent_samples	Sample • array of string • min items: 1 • unique	Link to associated parent samples from which this sample was derived.
preservation_medium	string	Medium used for preservation.
preservation_type  • Fixed  • Fresh  • Frozen  • Snap Frozen	enum of string	Method of preservation.
protocols	Protocol • array of string • min items: 1 • unique • restricted	Protocols providing experimental details.
sample_sources	SampleSource • array of string • min items: 1 • unique	Link to associated sample sources (e.g. tissue, cell culture, etc.).
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Unique identifier for the item assigned by the submitter. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_CELL-SAMPLE_[A-Z0-9-_.]{4,}$
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$
uuid	string	Unique ID by which this object is identified.