Object Model

Below are the object types (and data) supported by SMaHT Portal which may be relevant for metadata submission; types marked with (A) indicate abstract types which may not be directly created. Click on the name for more details. These can also be viewed within SMaHT Portal itself in a somewhat more rudimentary form here

Types

AlignedReads Analyte AnalytePreparation Assay CellCulture CellCultureMixture CellCultureSample CellLine CellSample Consortium DeathCircumstances Demographic Diagnosis Document Donor Exposure File (A)

FileFormat FileSet FilterSet Histology Image Library LibraryPreparation MedicalHistory MolecularTest OntologyTerm OutputFile Preparation (A) PreparationKit Protocol QualityMetric ReferenceFile ReferenceGenome

Sample (A) SamplePreparation SampleSource (A) Sequencer Sequencing Software SubmissionCenter SubmittedFile (A) Therapeutic Tissue TissueCollection TissueSample Treatment UnalignedReads User VariantCalls

Tip

To view the above types as a type hierarchy here

Data

• Consortia   (or here)
• File Formats   (or here)
• File Formats (Aligned Reads)   (or here)
• File Formats (Unaligned Reads)   (or here)
• File Formats (Variant Calls)   (or here)
• Reference Genomes   (or here)
• Submission Centers   (or here)

See Also

• Type Hierarchy
• File and Sample Nomenclature
• Referencing Existing Data
• Benchmarking Data

[ Generated: 2024-04-12 11:05 AM EDT | data.smaht.org 0.35.2 ]