Tissue
Summary of SMaHT Portal object type Tissue . Its parent type is: SampleSource. Types referencing this type are: Histology, TissueSample. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.Tip
See actual Tissue data hereRequired Properties
| Property | Type | Description |
|---|---|---|
| donor | Donor string | See below for more details. |
| submission_centers | SubmissionCenter array of string | See below for more details. See values here |
| submitted_id | string | See below for more details. |
| uberon_id | string | See below for more details. |
Identifying Properties
| Property | Type | Description |
|---|---|---|
| accession | string | See below for more details. |
| submitted_id | string | See below for more details. |
| uuid | string | See below for more details. |
Reference Properties
| Property | Type | Description |
|---|---|---|
| consortia | Consortium array of string | See below for more details. See values here |
| donor | Donor string | See below for more details. |
| submission_centers | SubmissionCenter array of string | See below for more details. See values here |
Properties
| Property | Type | Description |
|---|---|---|
| accession | string | A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.] |
| alternate_accessions | array of string • restricted | Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.] |
| consortia | Consortium • array of string • unique • restricted | Consortia associated with this item. See values here |
| display_title | string • calculated | - |
| donor | Donor • string | Link to the associated donor. |
| ischemic_time | integer • min value: 0 | Time interval of ischemia in minutes. |
| pathology_notes | string | Notes from pathologist report on the tissue. |
| ph | number • min value: 0 • max value: 14 | pH of the tissue. |
| preservation_time_interval | integer • min value: 0 | Time interval from beginning of tissue recovery until placed in preservation media in minutes. |
| prosector_notes | string | Notes from prosector report on the tissue recovery. |
| recovery_datetime | string • format: date | date-time | Date and time of tissue recovery. |
| recovery_interval | integer • min value: 0 | Total time interval of tissue recovery in minutes. |
| sample_count | integer • min value: 1 | Number of samples produced for this source. |
| size | number • min value: 0 | Size of the tissue in cubic centimeters. |
| status • deleted • draft • in review ← default • obsolete • public • released • restricted | enum of string • default: in review | - |
| submission_centers | SubmissionCenter • array of string • unique | Submission Centers that created this item. See values here |
| submitted_id | string | Identifier on submission. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_TISSUE_[A-Z0-9-_.]{4,}$ |
| tags | array of string • min string length: 1 • max string length: 50 • unique • restricted | Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9_-]+$ |
| uberon_id | string | Uberon identifier for the tissue. Must adhere to (regex) pattern: ^UBERON:[0-9]$ |
| uuid | string | Unique ID by which this object is identified. |
| volume | number • min value: 0 | Volume of the tissue in milliliters. |
| weight | number • min value: 0 | Weight of the tissue in grams. |