TissueCollection

Summary of SMaHT Portal object type TissueCollection . Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Tip

See actual TissueCollection data here

Required Properties

Property	Type	Description
donor	Donor string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
consortia	Consortium array of string	See below for more details. See values here
donor	Donor string	See below for more details.
protocols	Protocol array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here

Properties

Property	Type	Description
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
blood_cultures_available  • No  • Unknown  • Yes	enum of string	Whether blood cultures were drawn during tissue collection.
chest_incision_datetime	string • format: date-time	Date and time of chest incision for tissue collection.
collection_site  • TBD	enum of string	Site of tissue collection.
consortia	Consortium • array of string • unique • restricted	Consortia associated with this item. See values here
core_body_temperature	number • min value: 0	Body temperature of the donor during tissue collection in degrees Celsius.
core_body_temperature_location  • Anus  • Axilla	enum of string	Location of body temperature measurement for the donor during tissue collection.
cross_clamp_applied_datetime	string • format: date-time	Date and time when cross clamp was applied during tissue collection.
display_title	string • calculated	-
donor	Donor • string	Link to the associated donor.
donor_type  • TBD	enum of string	-
ischemic_time	number • min value: 0	Time interval in minutes of ischemia for tissue collection.
organ_transplant  • No  • Unknown  • Yes	enum of string	Whether the donor had organs removed for transplant.
organs_transplanted  • Cornea  • Heart  • Intestine  • Kidney  • Liver  • Lung  • Pancreas  • Skin	array of enum • min items: 1 • unique	The organs of the donor that were transplanted.
protocols	Protocol • array of string • min items: 1 • unique • restricted	Protocols providing experimental details.
recovery_kit_id	string	Identifier of the tissue recovery kit.
refrigeration_prior_to_procurement  • No  • Unknown  • Yes	enum of string	Whether the donor was refrigerated prior to tissue collection.
refrigeration_prior_to_procurement_time	number • min value: 0	Interval of time in hours the donor was refrigerated prior to tissue collection.
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Identifier on submission. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_TISSUE-COLLECTION_[A-Z0-9-_.]{4,}$
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9_-]+$
uuid	string	Unique ID by which this object is identified.
ventilator_less_than_24_hours  • No  • Unknown  • Yes	enum of string	Whether donor was on a ventilator less than 24 hours prior to tissue collection.