Analyte

Summary of SMaHT Portal object type Analyte . Types referencing this type are: Library. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Tip

See actual Analyte data here

Required Properties

Property	Type	Description
molecule	array of enum	See below for more details.
molecule_detail	array of enum	See below for more details.
samples	Sample array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
analyte_preparation	AnalytePreparation string	See below for more details.
consortia	Consortium array of string	See below for more details. See values here
protocols	Protocol array of string	See below for more details.
samples	Sample array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here

Properties

Property	Type	Description
a260_a280_ratio	number • min value: 0	Ratio of nucleic acid absorbance at 260 nm and 280 nm, used to determine a measure of DNA purity.
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
analyte_preparation	AnalytePreparation • string	Link to associated analyte preparation.
concentration	number • min value: 0	Analyte concentration.
concentration_unit  • mg/mL  • ng/uL	enum of string	Unit of the concentration.
consortia	Consortium • array of string • unique • restricted	Consortia associated with this item. See values here
description	string	Plain text description of the item.
display_title	string • calculated	-
molecule  • DNA  • RNA	array of enum • min items: 1 • unique	Molecule of interest for the analyte.
molecule_detail  • MicroRNA  • Total DNA  • Total RNA  • mRNA  • rRNA  • tRNA	array of enum • min items: 1 • unique	Biological features included in the analyte.
protocols	Protocol • array of string • min items: 1 • unique • restricted	Protocols providing experimental details.
ribosomal_rna_ratio	number • min value: 0	The 28S/18S ribosomal RNA band ratio used to assess the quality of total RNA.
rna_integrity_number	number • min value: 1 • max value: 10	Assessment of the integrity of RNA based on electrophoresis.
rna_integrity_number_instrument  • Agilent Bioanalyzer  • Caliper Life Sciences LabChip GX	enum of string	Instrument used for RIN assessment.
sample_quantity	number • min value: 0	The amount of sample used to generate the analyte.
sample_quantity_unit  • cells  • g  • mL  • mg  • uL  • ug	enum of string	Unit of the sample quantity.
samples	Sample • array of string • min items: 1 • unique	Link to associated samples.
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Identifier on submission. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_ANALYTE_[A-Z0-9-_.]{4,}$
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9_-]+$
uuid	string	Unique ID by which this object is identified.
volume	number • min value: 0	Analyte volume.
volume_unit  • mL  • uL	enum of string	Unit of the volume.