Library

Summary of SMaHT Portal object type Library . Types referencing this type are: FileSet. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Tip

See actual Library data here

Required Properties

Property Type Description
analyte Analyte
string 		See below for more details.
assay Assay
string 		See below for more details.
submission_centers SubmissionCenter
array of string 		See below for more details.
See values here
submitted_id string See below for more details.

Identifying Properties

Property Type Description
accession string See below for more details.
submitted_id string See below for more details.
uuid string See below for more details.

Reference Properties

Property Type Description
analyte Analyte
string 		See below for more details.
assay Assay
string 		See below for more details.
consortia Consortium
array of string 		See below for more details.
See values here
library_preparation LibraryPreparation
string 		See below for more details.
protocols Protocol
array of string 		See below for more details.
submission_centers SubmissionCenter
array of string 		See below for more details.
See values here

Properties

Property Type Description
a260_a280_ratio number
• min value: 0
 Ratio of nucleic acid absorbance at 260 nm and 280 nm, used to determine a measure of DNA purity.
accession string A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
adapter_name string Name of sequencing adapter.
adapter_sequence string Base sequence of sequencing adapter.
alternate_accessions array of string
• restricted
 Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
amplification_cycles integer
• min value: 0
 Number of PCR Cycles used for additional amplification.
analyte Analyte
• string
 Link to associated analyte.
analyte_weight number
• min value: 0
 Weight of analyte used to prepare library (mg).
assay Assay
• string
 Link to associated assay.
barcode_sequences array of string
• min items: 1
• unique
 Barcode sequence for multiplexed sequencing.
consortia Consortium
• array of string
• unique
• restricted
 Consortia associated with this item.
See values here
description string Plain text description of the item.
display_title string
• calculated
 -
fragment_maximum_length integer
• min value: 0
 Maximum length of the sequenced fragments (e.g., as predicted by Agilent Bioanalyzer).
fragment_mean_length number
• min value: 0
 Mean length of the sequenced fragments (e.g., as predicted by Agilent Bioanalyzer).
fragment_minimum_length integer
• min value: 0
 Minimum length of the sequenced fragments (e.g., as predicted by Agilent Bioanalyzer).
fragment_standard_deviation_length number
• min value: 0
 Standard deviation of length of the sequenced fragments (e.g., as predicted by Agilent Bioanalyzer).
insert_coefficient_of_variation number
• min value: 0
 Coefficient of variation of the length of the sample molecule in the fragments to be sequenced.
insert_maximum_length integer
• min value: 0
 Maximum length of the sample molecule in the fragments to be sequenced.
insert_mean_length number
• min value: 0
 Mean length of the sample molecule in the fragments to be sequenced.
insert_minimum_length integer
• min value: 0
 Minimum length of the sample molecule in the fragments to be sequenced.
insert_standard_deviation_length number
• min value: 0
 Standard deviation of the length of the sample molecule in the fragments to be sequenced.
library_preparation LibraryPreparation
• string
 Link to associated library preparation.
preparation_date string
• format: date
 Date of library preparation.
protocols Protocol
• array of string
• min items: 1
• unique
• restricted
 Protocols providing experimental details.
status
 • deleted
 • draft
 • in review ← default
 • obsolete
 • public
 • released
 • restricted 		enum of string
• default: in review
 -
submission_centers SubmissionCenter
• array of string
• unique
 Submission Centers that created this item.
See values here
submitted_id string Identifier on submission.
Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_LIBRARY_[A-Z0-9-_.]{4,}$
tags array of string
• min string length: 1
• max string length: 50
• unique
• restricted
 Key words that can tag an item - useful for filtering.
Must adhere to (regex) pattern: ^[a-zA-Z0-9_-]+$
target_insert_maximum_length integer
• min value: 0
 Target maximum length of the insert (bp).
target_insert_mean_length integer
• min value: 0
 Target mean length of the insert (bp).
target_insert_minimum_length integer
• min value: 0
 Target minimum length of the insert (bp).
uuid string Unique ID by which this object is identified.