AnalytePreparation

Summary of SMaHT Portal object type AnalytePreparation . Its parent type is: Preparation. Types referencing this type are: Analyte. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Description: Analyte Preparation items contain more detailed information on analyte extraction protocols.

Tip

See actual AnalytePreparation data here

Required Properties

Property	Type	Description
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
consortia	Consortium array of string	See below for more details. See values here
preparation_kits	PreparationKit array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here
treatments	Treatment array of string	See below for more details.

Properties

Property	Type	Description
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
cell_lysis_method  • Chemical  • Enzymatic  • Mechanical  • Thermal	array of enum • min items: 1 • unique	Cell lysis method for analyte extraction, if applicable. Relevant for extraction for single-cell assays.
cell_sorting_method  • Centrifugation  • Filtering  • Fluoresence-activated  • Isopycnic Sedimentation  • Laser Capture Microdissection  • Magnetic-activated  • Microfluidics  • Micromanipulation  • Selective Media  • Velocity Sedimentation	array of enum • min items: 1 • unique	Cell sorting method for analyte extraction, if applicable. Relevant for extraction for single-cell assays.
consortia	Consortium • array of string • unique	Consortia associated with this item. See values here
description	string	Plain text description of the item.
display_title	string • calculated	-
extraction_method  • Density Gradient Centrifugation  • Magnetic Beads  • Mechanical Dissociation  • Not Applicable  • Organic Chemicals  • Silica Column	array of enum • min items: 1 • unique	Method of analyte extraction.
homogenization_method	string	Method of sample homogenization, if applicable.
preparation_kits	PreparationKit • array of string • min items: 1 • unique	Links to associated preparation kits.
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Unique identifier for the item assigned by the submitter. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_ANALYTE-PREPARATION_[A-Z0-9-_.]{4,}$
suspension_type  • Nucleus  • Whole Cell	enum of string	Type of cell suspension. Relevant for extraction for single-cell assays.
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$
treatments	Treatment • array of string • min items: 1 • unique	Link to associated treatments performed during library preparation.
uuid	string	Unique ID by which this object is identified.