Donor

Summary of SMaHT Portal object type Donor . Types referencing this type are: AlignedReads, CellLine, DeathCircumstances, Demographic, DonorSpecificAssembly, FamilyHistory, File, HistologyImage, MedicalHistory, OutputFile, ReferenceFile, SubmittedFile, SupplementaryFile, Tissue, TissueCollection, UnalignedReads, VariantCalls. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Description: Individuals who donated tissues.

Tip

See actual Donor data here

Required Properties

Property	Type	Description
age	integer	See below for more details.
sex	string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.
tpc_submitted	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
consortia	Consortium array of string	See below for more details. See values here
submission_centers	SubmissionCenter array of string	See below for more details. See values here
tissues	Tissue array of string	See below for more details.

Properties

Property	Type	Description
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
age	integer • min value: 0 • max value: 89	Age of the donor (years). Note: donor age above 89 is represented as 89 to remove identifiable information.
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
consortia	Consortium • array of string • unique	Consortia associated with this item. See values here
display_title	string • calculated	-
eligibility  • No  • Unknown  • Yes	enum of string	Whether donor was deemed eligible for the study.
external_id	string	External ID for the item provided by submitter. Must adhere to (regex) pattern: ^[A-Za-z0-9-_]{3,}$
hardy_scale	integer • min value: 0 • max value: 4	Death classification based on the 4-point Hardy Scale.
sex  • Female  • Male  • Unknown	enum of string	Sex of the donor.
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Unique identifier for the item assigned by the submitter. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_DONOR_[A-Z0-9-_.]{4,}$
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$
tissues	Tissue • array of string • calculated	-
tpc_submitted  • False  • True	enum of string	Whether the donor was submitted by the TPC.
uuid	string	Unique ID by which this object is identified.