CellCulture

Summary of SMaHT Portal object type CellCulture . Its parent type is: SampleSource. Its derived types are: CellCultureMixture. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Description: A Cell Culture is a collection of cells grown under specific conditions. For example, the specific instance of COLO829BL that was cultured and grown by a specific center would be a Cell Culture item.

Tip

See actual CellCulture data here

Required Properties

Property	Type	Description
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
cell_line	CellLine array of string	See below for more details.
consortia	Consortium array of string	See below for more details. See values here
protocols	Protocol array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here
tissue_samples	Sample array of string	See below for more details.

Properties

Property	Type	Description
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
cell_line	CellLine • array of string	Cell line used for the cell culture.
consortia	Consortium • array of string • unique	Consortia associated with this item. See values here
culture_duration	integer • min value: 0	Total number of culturing days.
culture_harvest_date	string • format: date	YYYY-MM-DD format date for cell culture harvest.
culture_start_date	string • format: date	YYYY-MM-DD format date for cell culture start date.
description	string	Plain text description of the item.
display_title	string • calculated	-
external_id	string	External ID for the item provided by submitter. Must adhere to (regex) pattern: ^[A-Za-z0-9-_]{3,}$
growth_medium	string	Medium used for cell culture.
karyotype	string	Chromosome count and any noted rearrangements or copy number variation.
lot_number	array of string	Lot number of cell line.
passage_number	integer • min value: 0	Number of times the cell line has been passaged since the culture start date until harvest.
protocols	Protocol • array of string • min items: 1 • unique • restricted	Protocols providing experimental details.
sample_count	integer • min value: 1	Number of samples produced for this source.
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Unique identifier for the item assigned by the submitter. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_CELL-CULTURE_[A-Z0-9-_.]{4,}$
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$
tissue_samples	Sample • array of string • unique	Tissue samples the cell culture was derived from.
uuid	string	Unique ID by which this object is identified.