TissueSample

Summary of SMaHT Portal object type TissueSample . Its parent type is: Sample. Types referencing this type are: BrainPathologyReport, NonBrainPathologyReport, PathologyReport. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.


Description: Samples derived from a tissue. A Tissue Sample describes a portion taken from a Tissue, likely consisting of some unknown mixture of cell types.

Tip

See actual TissueSample data here

Required Properties

Property Type Description
category string See below for more details.
external_id string See below for more details.
sample_sources SampleSource
array of string 		See below for more details.
submission_centers SubmissionCenter
array of string 		See below for more details.
See values here
submitted_id string See below for more details.

Identifying Properties

Property Type Description
accession string See below for more details.
submitted_id string See below for more details.
uuid string See below for more details.

Reference Properties

Property Type Description
consortia Consortium
array of string 		See below for more details.
See values here
parent_samples Sample
array of string 		See below for more details.
protocols Protocol
array of string 		See below for more details.
sample_sources SampleSource
array of string 		See below for more details.
submission_centers SubmissionCenter
array of string 		See below for more details.
See values here

Properties

Property Type Description
accession string A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions array of string
• restricted
 Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
category
 • Aliquot
 • Cells
 • Core
 • Homogenate
 • Liquid
 • Specimen 		enum of string Type of tissue sample.
consortia Consortium
• array of string
• unique
 Consortia associated with this item.
See values here
core_size
 • 1.5
 • 3.0
 • 3.0 Donut 		enum of string Size of core sample, if applicable (mm).
description string Plain text description of the item.
display_title string
• calculated
 -
external_id string External ID for the item provided by submitter.
Must adhere to (regex) pattern: ^[A-Za-z0-9-_]{3,}$
parent_samples Sample
• array of string
• min items: 1
• unique
 Link to associated parent samples from which this sample was derived.
preservation_medium string Medium used for preservation.
preservation_type
 • Fixed
 • Fresh
 • Frozen
 • Snap Frozen 		enum of string Method of preservation.
processing_date string
• format: date
 Date the sample was processed.
processing_notes string Notes on the processing of the sample.
protocols Protocol
• array of string
• min items: 1
• unique
• restricted
 Protocols providing experimental details.
sample_sources SampleSource
• array of string
• min items: 1
• unique
 Link to associated sample sources (e.g. tissue, cell culture, etc.).
status
 • deleted
 • draft
 • in review ← default
 • obsolete
 • public
 • released
 • restricted 		enum of string
• default: in review
 -
submission_centers SubmissionCenter
• array of string
• unique
 Submission Centers that created this item.
See values here
submitted_id string Unique identifier for the item assigned by the submitter.
Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_TISSUE-SAMPLE_[A-Z0-9-_.]{4,}$
tags array of string
• min string length: 1
• max string length: 50
• unique
• restricted
 Key words that can tag an item - useful for filtering.
Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$
uuid string Unique ID by which this object is identified.
weight number
• min value: 0
 Weight of the sample (mg).