Sample

Summary of SMaHT Portal abstract (cannot be created directly) object type Sample . Its derived types are: CellCultureSample, CellSample, TissueSample. Types referencing this type are: AlignedReads, Analyte, CellCulture, CellCultureSample, CellLine, CellSample, File, HistologyImage, OutputFile, ReferenceFile, SubmittedFile, SupplementaryFile, TissueSample, UnalignedReads, VariantCalls. Property names in red are required properties; those in blue are identifying properties; and properties with types in green are reference properties.

Tip

See actual Sample data here

Required Properties

Property	Type	Description
submission_centers	SubmissionCenter array of string	See below for more details. See values here
submitted_id	string	See below for more details.

Identifying Properties

Property	Type	Description
accession	string	See below for more details.
submitted_id	string	See below for more details.
uuid	string	See below for more details.

Reference Properties

Property	Type	Description
consortia	Consortium array of string	See below for more details. See values here
protocols	Protocol array of string	See below for more details.
sample_sources	SampleSource array of string	See below for more details.
submission_centers	SubmissionCenter array of string	See below for more details. See values here

Properties

Property	Type	Description
accession	string	A unique identifier to be used to reference the object. [Only admins are allowed to set or update this value.]
alternate_accessions	array of string • restricted	Accessions previously assigned to objects that have been merged with this object. [Only admins are allowed to set or update this value.]
consortia	Consortium • array of string • unique	Consortia associated with this item. See values here
description	string	Plain text description of the item.
display_title	string • calculated	-
external_id	string	External ID for the item provided by submitter. Must adhere to (regex) pattern: ^[A-Za-z0-9-_]{3,}$
preservation_medium	string	Medium used for preservation.
preservation_type  • Fixed  • Fresh  • Frozen  • Snap Frozen	enum of string	Method of preservation.
protocols	Protocol • array of string • min items: 1 • unique • restricted	Protocols providing experimental details.
sample_sources	SampleSource • array of string • min items: 1 • unique	Link to associated sample sources (e.g. tissue, cell culture, etc.).
status  • deleted  • draft  • in review ← default  • obsolete  • public  • released  • restricted	enum of string • default: in review	-
submission_centers	SubmissionCenter • array of string • unique	Submission Centers that created this item. See values here
submitted_id	string	Unique identifier for the item assigned by the submitter. Must adhere to (regex) pattern: ^[A-Z0-9]{3,}_SAMPLE_[A-Z0-9-_.]{4,}$
tags	array of string • min string length: 1 • max string length: 50 • unique • restricted	Key words that can tag an item - useful for filtering. Must adhere to (regex) pattern: ^[a-zA-Z0-9|_-]+$
uuid	string	Unique ID by which this object is identified.